Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0480Hypothetical protein. (263 aa)    
Predicted Functional Partners:
CSIRO_3511
Putative LuxR-family regulatory protein.
  
 
 0.705
CSIRO_0481
Diguanylate cyclase/phosphodiesterase.
    
  0.695
CSIRO_2365
Sensory box histidine kinase/response regulator.
     
 0.692
CSIRO_0358
Diguanylate cyclase/phosphodiesterase.
    
  0.660
CSIRO_0589
Hypothetical protein.
    
  0.660
CSIRO_1389
Diguanylate cyclase/phosphodiesterase.
    
  0.660
pal
Outer membrane lipoprotein omp16 precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
       0.534
CSIRO_1996
Two-component response regulator.
  
 
 0.532
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
     
 0.516
CSIRO_0222
Hypothetical protein; Belongs to the multicopper oxidase YfiH/RL5 family.
     
  0.492
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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