Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0486Hypothetical protein. (93 aa)    
Predicted Functional Partners:
CSIRO_0487
Hypothetical protein.
     0.985
CSIRO_1178
Protein of unknown function DUF1446.
     
  0.635
CSIRO_2134
4-hydroxyphenylpyruvate dioxygenase.
     
  0.635
CSIRO_2178
Hypothetical protein.
  
     0.618
CSIRO_2352
Hypothetical protein.
 
     0.587
CSIRO_3784
Hypothetical protein.
  
     0.575
CSIRO_0483
TolA protein.
 
     0.560
CSIRO_0474
Hypothetical protein.
  
     0.553
CSIRO_2323
Hypothetical protein.
  
     0.536
CSIRO_1136
Hypothetical protein.
  
     0.534
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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