CSIRO_0500 protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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[Homology]

Score

CSIRO_0500

Hypothetical protein. (248 aa)

Predicted Functional Partners:

rplS

0.879

rplQ

0.828

rpmA

0.826

rpsP

0.816

rplM

0.802

rpsB

0.755

rplL

0.754

rpmF

0.742

rpsG

0.692

rplT

0.691

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_0500	rplL	CSIRO_0500	CSIRO_3516	Hypothetical protein.	LSU ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.754
CSIRO_0500	rplM	CSIRO_0500	CSIRO_3219	Hypothetical protein.	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.802
CSIRO_0500	rplQ	CSIRO_0500	CSIRO_3475	Hypothetical protein.	LSU ribosomal protein L17p.	0.828
CSIRO_0500	rplS	CSIRO_0500	CSIRO_1082	Hypothetical protein.	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.879
CSIRO_0500	rplT	CSIRO_0500	CSIRO_0873	Hypothetical protein.	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.691
CSIRO_0500	rpmA	CSIRO_0500	CSIRO_0787	Hypothetical protein.	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	0.826
CSIRO_0500	rpmF	CSIRO_0500	CSIRO_0687	Hypothetical protein.	LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.742
CSIRO_0500	rpsB	CSIRO_0500	CSIRO_2750	Hypothetical protein.	SSU ribosomal protein S2p; Belongs to the universal ribosomal protein uS2 family.	0.755
CSIRO_0500	rpsG	CSIRO_0500	CSIRO_3504	Hypothetical protein.	SSU ribosomal protein S7p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.692
CSIRO_0500	rpsP	CSIRO_0500	CSIRO_1085	Hypothetical protein.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.816
rplL	CSIRO_0500	CSIRO_3516	CSIRO_0500	LSU ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	Hypothetical protein.	0.754
rplL	rplM	CSIRO_3516	CSIRO_3219	LSU ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.993
rplL	rplQ	CSIRO_3516	CSIRO_3475	LSU ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	LSU ribosomal protein L17p.	0.996
rplL	rplS	CSIRO_3516	CSIRO_1082	LSU ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.995
rplL	rplT	CSIRO_3516	CSIRO_0873	LSU ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.995
rplL	rpmA	CSIRO_3516	CSIRO_0787	LSU ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	0.993
rplL	rpmF	CSIRO_3516	CSIRO_0687	LSU ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.992
rplL	rpsB	CSIRO_3516	CSIRO_2750	LSU ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	SSU ribosomal protein S2p; Belongs to the universal ribosomal protein uS2 family.	0.997
rplL	rpsG	CSIRO_3516	CSIRO_3504	LSU ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	SSU ribosomal protein S7p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.995
rplL	rpsP	CSIRO_3516	CSIRO_1085	LSU ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.991