Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CSIRO_0539 | argB | CSIRO_0539 | CSIRO_0533 | 5'-methylthioadenosine nucleosidase/ S-adenosylhomocysteine nucleosidase; Bifunctional. | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.579 |
| CSIRO_0539 | dapD | CSIRO_0539 | CSIRO_0537 | 5'-methylthioadenosine nucleosidase/ S-adenosylhomocysteine nucleosidase; Bifunctional. | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family. | 0.790 |
| CSIRO_0539 | dapE | CSIRO_0539 | CSIRO_0538 | 5'-methylthioadenosine nucleosidase/ S-adenosylhomocysteine nucleosidase; Bifunctional. | N-succinyl-L,L-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.802 |
| CSIRO_1249 | CSIRO_3947 | CSIRO_1249 | CSIRO_3947 | Benzoyl-CoA oxygenase. | Fe-S protein. | 0.791 |
| CSIRO_1249 | dapE | CSIRO_1249 | CSIRO_0538 | Benzoyl-CoA oxygenase. | N-succinyl-L,L-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.675 |
| CSIRO_1259 | argB | CSIRO_1259 | CSIRO_0533 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.979 |
| CSIRO_1259 | argC | CSIRO_1259 | CSIRO_3140 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.956 |
| CSIRO_1259 | argD | CSIRO_1259 | CSIRO_1258 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.992 |
| CSIRO_1259 | dapE | CSIRO_1259 | CSIRO_0538 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | N-succinyl-L,L-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.651 |
| CSIRO_1259 | dapF | CSIRO_1259 | CSIRO_1091 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.684 |
| CSIRO_2472 | CSIRO_3947 | CSIRO_2472 | CSIRO_3947 | Aspartate aminotransferase. | Fe-S protein. | 0.672 |
| CSIRO_2472 | argC | CSIRO_2472 | CSIRO_3140 | Aspartate aminotransferase. | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. | 0.459 |
| CSIRO_2472 | argD | CSIRO_2472 | CSIRO_1258 | Aspartate aminotransferase. | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.627 |
| CSIRO_2472 | dapD | CSIRO_2472 | CSIRO_0537 | Aspartate aminotransferase. | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family. | 0.640 |
| CSIRO_2472 | dapE | CSIRO_2472 | CSIRO_0538 | Aspartate aminotransferase. | N-succinyl-L,L-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.623 |
| CSIRO_2472 | dapF | CSIRO_2472 | CSIRO_1091 | Aspartate aminotransferase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.499 |
| CSIRO_3947 | CSIRO_1249 | CSIRO_3947 | CSIRO_1249 | Fe-S protein. | Benzoyl-CoA oxygenase. | 0.791 |
| CSIRO_3947 | CSIRO_2472 | CSIRO_3947 | CSIRO_2472 | Fe-S protein. | Aspartate aminotransferase. | 0.672 |
| CSIRO_3947 | dapE | CSIRO_3947 | CSIRO_0538 | Fe-S protein. | N-succinyl-L,L-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.688 |
| argB | CSIRO_0539 | CSIRO_0533 | CSIRO_0539 | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 5'-methylthioadenosine nucleosidase/ S-adenosylhomocysteine nucleosidase; Bifunctional. | 0.579 |
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