Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0620Hypothetical protein. (274 aa)    
Predicted Functional Partners:
CSIRO_0621
Cyclopropane-fatty-acyl-phospholipid synthase-like protein.
 
     0.960
CSIRO_0618
Amine oxidase.
     0.929
CSIRO_0617
Hypothetical protein.
 
     0.861
CSIRO_0622
Hypothetical protein.
 
     0.751
CSIRO_3007
S-adenosyl-L-methionine dependent methyltransferase.
 
     0.648
CSIRO_0619
Hypothetical protein.
       0.572
CSIRO_2604
Cyclopropane-fatty-acyl-phospholipid synthase.
 
     0.544
CSIRO_2139
Putative esterase.
 
     0.425
CSIRO_4041
Cyclopropane-fatty-acyl-phospholipid synthase.
 
     0.412
CSIRO_3416
Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
 
     0.407
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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