CSIRO_0638 protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CSIRO_0638

RNA-binding S4. (89 aa)

Predicted Functional Partners:

rplS

0.887

CSIRO_1261

0.881

CSIRO_0639

0.877

rpmB

0.874

rplW

0.847

rpmH

0.844

rplQ

0.843

rpmA

0.828

rplB

0.828

rplT

0.826

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_0638	CSIRO_0639	CSIRO_0638	CSIRO_0639	RNA-binding S4.	ATP-dependent DNA helicase.	0.877
CSIRO_0638	CSIRO_1261	CSIRO_0638	CSIRO_1261	RNA-binding S4.	Chaperone protein Hsp33; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.	0.881
CSIRO_0638	rplB	CSIRO_0638	CSIRO_3497	RNA-binding S4.	LSU ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.828
CSIRO_0638	rplQ	CSIRO_0638	CSIRO_3475	RNA-binding S4.	LSU ribosomal protein L17p.	0.843
CSIRO_0638	rplS	CSIRO_0638	CSIRO_1082	RNA-binding S4.	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.887
CSIRO_0638	rplT	CSIRO_0638	CSIRO_0873	RNA-binding S4.	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.826
CSIRO_0638	rplW	CSIRO_0638	CSIRO_3498	RNA-binding S4.	LSU ribosomal protein L23p; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.847
CSIRO_0638	rpmA	CSIRO_0638	CSIRO_0787	RNA-binding S4.	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	0.828
CSIRO_0638	rpmB	CSIRO_0638	CSIRO_0641	RNA-binding S4.	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.	0.874
CSIRO_0638	rpmH	CSIRO_0638	CSIRO_0528	RNA-binding S4.	LSU ribosomal protein L34p; Belongs to the bacterial ribosomal protein bL34 family.	0.844
CSIRO_0639	CSIRO_0638	CSIRO_0639	CSIRO_0638	ATP-dependent DNA helicase.	RNA-binding S4.	0.877
CSIRO_0639	rplB	CSIRO_0639	CSIRO_3497	ATP-dependent DNA helicase.	LSU ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.721
CSIRO_0639	rplQ	CSIRO_0639	CSIRO_3475	ATP-dependent DNA helicase.	LSU ribosomal protein L17p.	0.544
CSIRO_0639	rplW	CSIRO_0639	CSIRO_3498	ATP-dependent DNA helicase.	LSU ribosomal protein L23p; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.903
CSIRO_1261	CSIRO_0638	CSIRO_1261	CSIRO_0638	Chaperone protein Hsp33; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.	RNA-binding S4.	0.881
rplB	CSIRO_0638	CSIRO_3497	CSIRO_0638	LSU ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	RNA-binding S4.	0.828
rplB	CSIRO_0639	CSIRO_3497	CSIRO_0639	LSU ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	ATP-dependent DNA helicase.	0.721
rplB	rplQ	CSIRO_3497	CSIRO_3475	LSU ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	LSU ribosomal protein L17p.	0.996
rplB	rplS	CSIRO_3497	CSIRO_1082	LSU ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.993
rplB	rplT	CSIRO_3497	CSIRO_0873	LSU ribosomal protein L2p; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.993