CSIRO_0638 protein (Bradyrhizobiaceae bacterium SG6C)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

CSIRO_0638

RNA-binding S4. (89 aa)

Predicted Functional Partners:

rplS

0.968

rpmB

0.966

rplQ

0.961

rplW

0.961

rpmH

0.959

rplM

0.957

rplN

0.957

rpmF

0.956

rplU

0.956

rpmA

0.956

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_0638	rplM	CSIRO_0638	CSIRO_3219	RNA-binding S4.	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.957
CSIRO_0638	rplN	CSIRO_0638	CSIRO_3490	RNA-binding S4.	LSU ribosomal protein L14p; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.957
CSIRO_0638	rplQ	CSIRO_0638	CSIRO_3475	RNA-binding S4.	LSU ribosomal protein L17p.	0.961
CSIRO_0638	rplS	CSIRO_0638	CSIRO_1082	RNA-binding S4.	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.968
CSIRO_0638	rplU	CSIRO_0638	CSIRO_0786	RNA-binding S4.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.956
CSIRO_0638	rplW	CSIRO_0638	CSIRO_3498	RNA-binding S4.	LSU ribosomal protein L23p; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.961
CSIRO_0638	rpmA	CSIRO_0638	CSIRO_0787	RNA-binding S4.	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	0.956
CSIRO_0638	rpmB	CSIRO_0638	CSIRO_0641	RNA-binding S4.	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.	0.966
CSIRO_0638	rpmF	CSIRO_0638	CSIRO_0687	RNA-binding S4.	LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.956
CSIRO_0638	rpmH	CSIRO_0638	CSIRO_0528	RNA-binding S4.	LSU ribosomal protein L34p; Belongs to the bacterial ribosomal protein bL34 family.	0.959
rplM	CSIRO_0638	CSIRO_3219	CSIRO_0638	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	RNA-binding S4.	0.957
rplM	rplN	CSIRO_3219	CSIRO_3490	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L14p; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.999
rplM	rplQ	CSIRO_3219	CSIRO_3475	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L17p.	0.998
rplM	rplS	CSIRO_3219	CSIRO_1082	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.997
rplM	rplU	CSIRO_3219	CSIRO_0786	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.997
rplM	rplW	CSIRO_3219	CSIRO_3498	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L23p; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplM	rpmA	CSIRO_3219	CSIRO_0787	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	0.998
rplM	rpmB	CSIRO_3219	CSIRO_0641	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.	0.996
rplM	rpmF	CSIRO_3219	CSIRO_0687	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.996
rplM	rpmH	CSIRO_3219	CSIRO_0528	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L34p; Belongs to the bacterial ribosomal protein bL34 family.	0.995