STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobTAerobic cobaltochelatase, CobT subunit. (631 aa)    
Predicted Functional Partners:
cobS
Aerobic cobaltochelatase, CobS subunit.
 
 
 0.962
CSIRO_0642
Hypothetical protein.
       0.800
CSIRO_0647
DnaJ-like domain-containing protein.
 
     0.741
CSIRO_1105
Nucleotidyltransferase.
  
  
  0.665
pduO
cob(I)alamin adenosyltransferase PduO; Belongs to the Cob(I)alamin adenosyltransferase family.
    
  0.616
CSIRO_1334
ATP synthase protein I.
  
     0.611
CSIRO_0227
Hypothetical protein.
  
     0.591
CSIRO_1104
ATP-dependent nuclease subunit B.
  
     0.560
CSIRO_0639
ATP-dependent DNA helicase.
  
     0.558
gcrA
Cell cycle regulator GcrA.
  
     0.544
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.