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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cobSAerobic cobaltochelatase, CobS subunit. (331 aa)    
Predicted Functional Partners:
cobT
Aerobic cobaltochelatase, CobT subunit.
 
 
 0.988
soxX
Sulfur oxidation protein SoxX.
  
  
 0.801
pduO
cob(I)alamin adenosyltransferase PduO; Belongs to the Cob(I)alamin adenosyltransferase family.
     
  0.768
CSIRO_3387
ATPase.
    
 0.689
CSIRO_0946
Cobyrinic acid a,c-diamide synthase.
    
 0.653
CSIRO_0642
Hypothetical protein.
       0.570
CSIRO_0647
DnaJ-like domain-containing protein.
 
     0.543
CSIRO_0645
Hypothetical protein.
       0.463
CSIRO_0646
Hypothetical protein.
       0.453
lysS
lysyl-tRNA synthetase (class I); Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.428
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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