Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0798Carboxyl-terminal protease; Belongs to the peptidase S41A family. (447 aa)    
Predicted Functional Partners:
CSIRO_0797
Peptidase M23B precursor.
 
  
 0.943
tolA-2
TolA protein.
  
 0.851
CSIRO_3901
Hypothetical protein.
  
 0.851
rlmH
LSU methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.812
CSIRO_1459
NLP/P60 family lipoprotein.
    
 
 0.745
rsfS
Iojap protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
   
   0.724
tadD
Flp pilus assembly protein TadD.
   
 
 0.666
CSIRO_2225
Hypothetical protein.
   
 
 0.666
CSIRO_3563
Hypothetical protein.
   
 
 0.666
CSIRO_1763
Hypothetical protein.
  
 
 
 0.647
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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