STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlpALipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (148 aa)    
Predicted Functional Partners:
mtgA
Peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
 
   
 0.526
tolB
TolB protein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.495
lptB
Lipopolysaccharide ABC transporter ATP-binding protein LptB.
 
 
   0.457
CSIRO_3171
N-acetylmuramoyl-L-alanine amidase.
  
  
 0.446
CSIRO_3130
Hypothetical protein.
     
 0.437
CSIRO_3170
Multimodular transpeptidase-transglycosylase; Bifunctional.
  
   
 0.430
CSIRO_2357
Transpeptidase / transglycosylase; Bifunctional.
 
   
 0.428
CSIRO_1220
Transpeptidase-transglycosylase; Bifunctional.
 
   
 0.409
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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