STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvcRABC transporter ATP-binding protein YvcR. (248 aa)    
Predicted Functional Partners:
CSIRO_0823
Putative inner membrane protein.
 
  
  0.961
CSIRO_0821
Arylesterase precursor.
 
     0.840
phnK
Phosphonates transport ATP-binding protein PhnK.
 
    
0.778
rpsE
SSU ribosomal protein S5p; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.543
CSIRO_0824
Membrane protein; Belongs to the BI1 family.
       0.509
CSIRO_0545
Putative acyl-CoA thioesterase precursor.
 
     0.483
CSIRO_2027
Branched-chain amino acid transport ATP-binding protein; Overlaps another CDS with the same product name.
  
     0.471
CSIRO_0820
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.470
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.468
CSIRO_2197
AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system.
    
  0.439
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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