Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yvcRABC transporter ATP-binding protein YvcR. (248 aa)    
Predicted Functional Partners:
CSIRO_0823
Putative inner membrane protein.
 
 
 0.989
CSIRO_0821
Arylesterase precursor.
 
 
   0.929
phnK
Phosphonates transport ATP-binding protein PhnK.
 
    
0.778
rplL
LSU ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
    
   0.769
CSIRO_0545
Putative acyl-CoA thioesterase precursor.
 
 
   0.737
CSIRO_2197
AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system.
   
 0.701
CSIRO_0824
Membrane protein; Belongs to the BI1 family.
       0.605
CSIRO_0820
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.552
rpsE
SSU ribosomal protein S5p; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.543
CSIRO_2027
Branched-chain amino acid transport ATP-binding protein; Overlaps another CDS with the same product name.
  
     0.471
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.