CSIRO_0837 protein (Bradyrhizobiaceae bacterium SG6C)

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Score

CSIRO_0837

Pseudouridine synthase. (255 aa)

Predicted Functional Partners:

CSIRO_2248

0.846

rplO

0.832

rplM

0.819

rplC

0.797

CSIRO_3548

0.784

trmB

0.777

rplQ

0.775

rplX

0.760

rsfS

0.728

rplU

0.725

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_0837	CSIRO_2248	CSIRO_0837	CSIRO_2248	Pseudouridine synthase.	Rhodanese domain-containing protein; Belongs to the UPF0176 family.	0.846
CSIRO_0837	CSIRO_3548	CSIRO_0837	CSIRO_3548	Pseudouridine synthase.	rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	0.784
CSIRO_0837	rplC	CSIRO_0837	CSIRO_3500	Pseudouridine synthase.	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.797
CSIRO_0837	rplM	CSIRO_0837	CSIRO_3219	Pseudouridine synthase.	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.819
CSIRO_0837	rplO	CSIRO_0837	CSIRO_3481	Pseudouridine synthase.	LSU ribosomal protein L15p; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.832
CSIRO_0837	rplQ	CSIRO_0837	CSIRO_3475	Pseudouridine synthase.	LSU ribosomal protein L17p.	0.775
CSIRO_0837	rplU	CSIRO_0837	CSIRO_0786	Pseudouridine synthase.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.725
CSIRO_0837	rplX	CSIRO_0837	CSIRO_3489	Pseudouridine synthase.	LSU ribosomal protein L24p; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.760
CSIRO_0837	rsfS	CSIRO_0837	CSIRO_0795	Pseudouridine synthase.	Iojap protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.	0.728
CSIRO_0837	trmB	CSIRO_0837	CSIRO_1137	Pseudouridine synthase.	tRNA(m7G46)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.777
CSIRO_2248	CSIRO_0837	CSIRO_2248	CSIRO_0837	Rhodanese domain-containing protein; Belongs to the UPF0176 family.	Pseudouridine synthase.	0.846
CSIRO_3548	CSIRO_0837	CSIRO_3548	CSIRO_0837	rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Pseudouridine synthase.	0.784
CSIRO_3548	rplC	CSIRO_3548	CSIRO_3500	rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.847
CSIRO_3548	rplM	CSIRO_3548	CSIRO_3219	rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.882
CSIRO_3548	rplO	CSIRO_3548	CSIRO_3481	rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	LSU ribosomal protein L15p; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.860
CSIRO_3548	rplQ	CSIRO_3548	CSIRO_3475	rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	LSU ribosomal protein L17p.	0.819
CSIRO_3548	rplU	CSIRO_3548	CSIRO_0786	rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.824
CSIRO_3548	rplX	CSIRO_3548	CSIRO_3489	rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	LSU ribosomal protein L24p; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.842
CSIRO_3548	rsfS	CSIRO_3548	CSIRO_0795	rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	Iojap protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.	0.846
CSIRO_3548	trmB	CSIRO_3548	CSIRO_1137	rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.	tRNA(m7G46)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.500