Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSIRO_0905Choline-sulfatase. (572 aa)    
Predicted Functional Partners:
rpsD
SSU ribosomal protein S4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
 
  0.761
CSIRO_0723
Hypothetical protein.
   
   0.750
CSIRO_3684
Hypothetical protein.
   
   0.738
CSIRO_0639
ATP-dependent DNA helicase.
    
 0.679
CSIRO_0778
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
    
 0.679
rhlE
ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
    
 0.679
CSIRO_3149
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
    
 0.679
CSIRO_0984
Heparinase II/III-like protein.
    
  0.652
CSIRO_1614
Choline dehydrogenase.
    
 0.652
CSIRO_2296
Glucose-methanol-choline oxidoreductase.
    
 0.652
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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