Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0906ComM-like protein. (215 aa)    
Predicted Functional Partners:
CSIRO_0918
ComM-like protein.
 
     0.976
smf
Rossmann fold nucleotide-binding protein Smf.
 
 
 0.777
CSIRO_0900
Endonuclease; Belongs to the UPF0102 family.
 
  
 0.706
CSIRO_0662
Competence protein F-like protein.
 
  
 0.688
CSIRO_0907
Signal recognition particle GTPase.
       0.515
CSIRO_0905
Choline-sulfatase.
       0.485
CSIRO_2789
Competence protein.
 
  
 0.485
CSIRO_3510
Hypothetical protein.
     
  0.463
CSIRO_0941
Putative membrane protein.
     
  0.462
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
   
 0.459
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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