CSIRO_0918 protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

CSIRO_0918

ComM-like protein. (298 aa)

Predicted Functional Partners:

CSIRO_0906

0.976

smf

0.800

CSIRO_0662

0.743

CSIRO_0900

0.729

CSIRO_0917

0.546

ruvC

0.486

CSIRO_3510

0.463

CSIRO_0941

0.462

CSIRO_0919

0.453

flgF

0.428

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_0662	CSIRO_0900	CSIRO_0662	CSIRO_0900	Competence protein F-like protein.	Endonuclease; Belongs to the UPF0102 family.	0.711
CSIRO_0662	CSIRO_0906	CSIRO_0662	CSIRO_0906	Competence protein F-like protein.	ComM-like protein.	0.688
CSIRO_0662	CSIRO_0918	CSIRO_0662	CSIRO_0918	Competence protein F-like protein.	ComM-like protein.	0.743
CSIRO_0662	CSIRO_3510	CSIRO_0662	CSIRO_3510	Competence protein F-like protein.	Hypothetical protein.	0.741
CSIRO_0662	smf	CSIRO_0662	CSIRO_3354	Competence protein F-like protein.	Rossmann fold nucleotide-binding protein Smf.	0.912
CSIRO_0900	CSIRO_0662	CSIRO_0900	CSIRO_0662	Endonuclease; Belongs to the UPF0102 family.	Competence protein F-like protein.	0.711
CSIRO_0900	CSIRO_0906	CSIRO_0900	CSIRO_0906	Endonuclease; Belongs to the UPF0102 family.	ComM-like protein.	0.706
CSIRO_0900	CSIRO_0918	CSIRO_0900	CSIRO_0918	Endonuclease; Belongs to the UPF0102 family.	ComM-like protein.	0.729
CSIRO_0900	smf	CSIRO_0900	CSIRO_3354	Endonuclease; Belongs to the UPF0102 family.	Rossmann fold nucleotide-binding protein Smf.	0.766
CSIRO_0906	CSIRO_0662	CSIRO_0906	CSIRO_0662	ComM-like protein.	Competence protein F-like protein.	0.688
CSIRO_0906	CSIRO_0900	CSIRO_0906	CSIRO_0900	ComM-like protein.	Endonuclease; Belongs to the UPF0102 family.	0.706
CSIRO_0906	CSIRO_0918	CSIRO_0906	CSIRO_0918	ComM-like protein.	ComM-like protein.	0.976
CSIRO_0906	CSIRO_0941	CSIRO_0906	CSIRO_0941	ComM-like protein.	Putative membrane protein.	0.462
CSIRO_0906	CSIRO_3510	CSIRO_0906	CSIRO_3510	ComM-like protein.	Hypothetical protein.	0.463
CSIRO_0906	flgF	CSIRO_0906	CSIRO_3771	ComM-like protein.	Flagellar basal-body rod protein FlgF; Belongs to the flagella basal body rod proteins family.	0.428
CSIRO_0906	ruvC	CSIRO_0906	CSIRO_0498	ComM-like protein.	Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.	0.459
CSIRO_0906	smf	CSIRO_0906	CSIRO_3354	ComM-like protein.	Rossmann fold nucleotide-binding protein Smf.	0.777
CSIRO_0917	CSIRO_0918	CSIRO_0917	CSIRO_0918	Site-specific recombinase.	ComM-like protein.	0.546
CSIRO_0918	CSIRO_0662	CSIRO_0918	CSIRO_0662	ComM-like protein.	Competence protein F-like protein.	0.743
CSIRO_0918	CSIRO_0900	CSIRO_0918	CSIRO_0900	ComM-like protein.	Endonuclease; Belongs to the UPF0102 family.	0.729