Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0960Ammonium transporter. (480 aa)    
Predicted Functional Partners:
CSIRO_3203
Nitrogen regulatory protein; Belongs to the P(II) protein family.
 0.986
CSIRO_0961
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 0.983
CSIRO_0963
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 0.942
CSIRO_0268
Glutamate synthase (NADPH) large chain.
 
  
 0.732
CSIRO_4108
Hypothetical protein.
   
 0.654
CSIRO_2980
Nitrogen regulation protein NR(II).
  
 
 0.651
CSIRO_1207
Hypothetical protein.
    
 0.588
CSIRO_2365
Sensory box histidine kinase/response regulator.
  
 
 0.548
CSIRO_1341
Sensor histidine kinase.
  
 0.520
CSIRO_1555
Two-component hybrid sensor and regulator.
    
 0.493
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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