Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0969Hypothetical protein. (224 aa)    
Predicted Functional Partners:
CSIRO_0970
Thioredoxin domain-containing protein.
 
   
 0.806
CSIRO_0968
UPF0434 protein YcaR; Belongs to the UPF0434 family.
 
     0.754
CSIRO_4236
Hypothetical protein.
     
 0.749
groL
Heat shock protein 60 family chaperone GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
    
 0.729
groL-2
Heat shock protein 60 family chaperone GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
    
 0.729
CSIRO_0876
Hypothetical protein.
    
  0.701
CSIRO_1024
Amine oxidase.
    
  0.701
CSIRO_2433
Cellulose biosynthesis protein.
  
  
  0.691
CSIRO_0272
TPR domain-containing protein.
  
  
  0.683
CSIRO_3406
TPR repeat-containing protein.
  
  
  0.669
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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