STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0979Putative 2-pyrone-4,6-dicarboxylic acid hydrolase. (271 aa)    
Predicted Functional Partners:
nanT
Sialic acid transporter NanT.
 
     0.673
CSIRO_1245
benzoate-CoA ligase.
  
  
  0.660
CSIRO_2127
Putative 3-(3-hydroxy-phenyl)propionate hydroxylase.
     
 0.619
CSIRO_3833
Oxidoreductase-like protein.
    
 0.617
wbpB
Lipopolysaccaride biosynthesis protein WbpB.
    
 0.592
CSIRO_2269
Hypothetical protein.
  
  
 0.493
CSIRO_1422
P-hydroxybenzoate hydroxylase.
 
  
 0.492
CSIRO_1247
benzoyl-CoA-dihydrodiol lyase.
  
  
  0.422
CSIRO_1974
Hypothetical protein.
    
 0.419
CSIRO_1975
Hypothetical protein.
    
 0.419
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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