Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0987Hypothetical protein. (51 aa)    
Predicted Functional Partners:
CSIRO_1787
Putative hydrolase.
  
     0.731
hisS
histidyl-tRNA synthetase.
  
     0.726
CSIRO_1267
Deoxycytidine triphosphate deaminase.
  
     0.717
CSIRO_1357
Hypothetical protein.
  
     0.683
CSIRO_0988
Hypothetical protein.
       0.595
CSIRO_0826
Hypothetical protein.
  
     0.594
aroQ
3-dehydroquinate dehydratase II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
     
  0.578
CSIRO_0527
Two-component hybrid sensor and regulator.
  
     0.543
CSIRO_2349
Hypothetical protein.
  
     0.531
CSIRO_1459
NLP/P60 family lipoprotein.
  
     0.505
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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