Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
CSIRO_0988Hypothetical protein. (181 aa)    
Predicted Functional Partners:
hrpB
ATP-dependent helicase HrpB.
    
 0.723
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
 
 0.699
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.689
CSIRO_0639
ATP-dependent DNA helicase.
    
  0.650
CSIRO_0778
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
    
  0.650
rhlE
ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
    
  0.650
CSIRO_3149
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
    
  0.650
CSIRO_0987
Hypothetical protein.
       0.595
CSIRO_0660
5-methyl-dCTP pyrophosphohydrolase.
     
  0.575
rppH
Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
     
  0.575
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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