STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_0994Protein of unknown function DUF55. (137 aa)    
Predicted Functional Partners:
gpsA
Glycerol-3-phosphate dehydrogenase (NADP+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.790
ccoP
Cytochrome c oxidase subunit CcoP; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
   
 
 0.654
tsaD
YgjD/Kae1/Qri7-like protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
     
 0.652
ccoO
Cytochrome c oxidase subunit CcoO.
   
 
  0.628
ccoQ
Cytochrome c oxidase subunit CcoQ.
   
 
  0.618
ccoN
Cytochrome c oxidase subunit CcoN; Belongs to the heme-copper respiratory oxidase family.
   
 
  0.617
CSIRO_1317
Cytochrome c oxidase polypeptide II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
     
 0.608
CSIRO_1318
Cytochrome c oxidase polypeptide I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
     
 0.608
CSIRO_1322
Cytochrome c oxidase polypeptide III.
     
 0.608
CSIRO_1935
Formate dehydrogenase-O, major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
  0.599
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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