Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1038OmpA/MotB. (327 aa)    
Predicted Functional Partners:
motB
Flagellar motor rotation protein MotB.
    
 0.875
motB-2
Flagellar motor rotation protein MotB.
    
 0.873
CSIRO_3231
Capsule polysaccharide export protein.
  
 0.799
CSIRO_1175
Capsule polysaccharide export protein.
  
 0.795
CSIRO_0610
OmpA-like transmembrane domain-containing protein.
   
 0.793
flgE
Flagellar hook protein FlgE.
   
 0.745
CSIRO_0162
Hypothetical protein.
  
 0.736
CSIRO_3901
Hypothetical protein.
   
 0.729
CSIRO_3561
TonB-dependent receptor.
     
 0.717
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.708
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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