Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1149Universal stress protein UspA-like protein. (164 aa)    
Predicted Functional Partners:
CSIRO_1301
Putative transmembrane protein.
 
     0.810
CSIRO_1302
Protein of unknown function DUF81.
 
     0.806
nifU
NifU protein.
     
 0.619
CSIRO_0642
Hypothetical protein.
  
     0.593
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.553
CSIRO_1541
Periplasmic thiol:disulfide oxidoreductase.
  
     0.520
CSIRO_2662
NAD-dependent malic enzyme.
  
  
 0.498
CSIRO_2365
Sensory box histidine kinase/response regulator.
     
 0.488
CSIRO_0219
Hypothetical protein.
  
     0.484
mur
Manganese uptake regulation protein Mur; Belongs to the Fur family.
 
   
 0.477
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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