STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1159malonyl-CoA decarboxylase. (458 aa)    
Predicted Functional Partners:
CSIRO_1638
TRAP dicarboxylate transporter DctQ subunit.
 
 0.906
CSIRO_1639
TRAP transporter solute receptor.
 
 
 0.819
CSIRO_4003
TRAP-like transport system, small permease component.
  
 0.739
CSIRO_2365
Sensory box histidine kinase/response regulator.
     
 0.726
CSIRO_1158
Hypothetical protein; Belongs to the pirin family.
       0.696
paaN
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.
     
 0.670
CSIRO_2425
Biotin carboxylase.
    
  0.665
CSIRO_2662
NAD-dependent malic enzyme.
    
  0.643
CSIRO_1927
Iron-sulfur cluster-binding protein.
  
  
  0.631
CSIRO_3179
Biotin carboxylase of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
     
 0.625
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.