rpsT protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

rpsT

SSU ribosomal protein S20p; Binds directly to 16S ribosomal RNA. (88 aa)

Predicted Functional Partners:

rpsU

0.996

rpmH

0.996

rpmB

0.996

rpmF

0.996

rplU

0.996

rpmA

0.996

rpsP

0.996

rpsO

0.996

rpmE

0.996

rpsB

0.996

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplU	rpmA	CSIRO_0786	CSIRO_0787	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	0.999
rplU	rpmB	CSIRO_0786	CSIRO_0641	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.	0.996
rplU	rpmE	CSIRO_0786	CSIRO_1393	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	LSU ribosomal protein L31p; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.996
rplU	rpmF	CSIRO_0786	CSIRO_0687	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.996
rplU	rpmH	CSIRO_0786	CSIRO_0528	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	LSU ribosomal protein L34p; Belongs to the bacterial ribosomal protein bL34 family.	0.995
rplU	rpsB	CSIRO_0786	CSIRO_2750	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	SSU ribosomal protein S2p; Belongs to the universal ribosomal protein uS2 family.	0.996
rplU	rpsO	CSIRO_0786	CSIRO_1127	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	SSU ribosomal protein S15p; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.996
rplU	rpsP	CSIRO_0786	CSIRO_1085	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.997
rplU	rpsT	CSIRO_0786	CSIRO_1172	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	SSU ribosomal protein S20p; Binds directly to 16S ribosomal RNA.	0.996
rplU	rpsU	CSIRO_0786	CSIRO_0367	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	Ribosomal protein S21p; Belongs to the bacterial ribosomal protein bS21 family.	0.996
rpmA	rplU	CSIRO_0787	CSIRO_0786	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
rpmA	rpmB	CSIRO_0787	CSIRO_0641	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.	0.997
rpmA	rpmE	CSIRO_0787	CSIRO_1393	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	LSU ribosomal protein L31p; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.996
rpmA	rpmF	CSIRO_0787	CSIRO_0687	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family.	0.996
rpmA	rpmH	CSIRO_0787	CSIRO_0528	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	LSU ribosomal protein L34p; Belongs to the bacterial ribosomal protein bL34 family.	0.994
rpmA	rpsB	CSIRO_0787	CSIRO_2750	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	SSU ribosomal protein S2p; Belongs to the universal ribosomal protein uS2 family.	0.998
rpmA	rpsO	CSIRO_0787	CSIRO_1127	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	SSU ribosomal protein S15p; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.997
rpmA	rpsP	CSIRO_0787	CSIRO_1085	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.997
rpmA	rpsT	CSIRO_0787	CSIRO_1172	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	SSU ribosomal protein S20p; Binds directly to 16S ribosomal RNA.	0.996
rpmA	rpsU	CSIRO_0787	CSIRO_0367	LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family.	Ribosomal protein S21p; Belongs to the bacterial ribosomal protein bS21 family.	0.995