Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1175Capsule polysaccharide export protein. (188 aa)    
Predicted Functional Partners:
CSIRO_3230
Lipopolysaccharide biosynthesis.
 
 0.996
CSIRO_3233
Putative glycosyl transferase.
 
 
 0.989
CSIRO_2095
Succinoglycan biosynthesis transport protein.
 
 0.987
CSIRO_3835
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.898
CSIRO_3253
Putative O-antigen export system ATP-binding protein.
  
 
 0.887
rfbD
O-antigen export system permease protein RfbD.
  
 
 0.840
CSIRO_0610
OmpA-like transmembrane domain-containing protein.
     
 0.828
CSIRO_3561
TonB-dependent receptor.
  
  
 0.814
CSIRO_1038
OmpA/MotB.
  
 0.795
CSIRO_1253
OmpA/MotB-like protein.
   
 0.755
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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