Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSIRO_1180DMT superfamily permease. (305 aa)    
Predicted Functional Partners:
CSIRO_1178
Protein of unknown function DUF1446.
       0.629
CSIRO_1179
Hypothetical protein.
       0.629
CSIRO_2754
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
     
  0.579
CSIRO_0905
Choline-sulfatase.
    
  0.514
CSIRO_1182
Isoquinoline 1-oxidoreductase beta subunit.
       0.486
CSIRO_2559
WD40-like repeat-containing protein.
  
     0.478
CSIRO_2560
Hypothetical protein.
  
     0.476
rpsD
SSU ribosomal protein S4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
     
  0.469
CSIRO_0691
Bifunctional; octaprenyl-diphosphate synthase/ dimethylallyltransferase/ geranyltranstransferase (farnesyldiphosphate synthase)/ geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.
    
  0.450
CSIRO_1177
Hypothetical protein.
       0.450
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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