Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1190Saccharopine dehydrogenase. (392 aa)    
Predicted Functional Partners:
CSIRO_2232
Hypothetical protein.
  
     0.734
CSIRO_1991
Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase.
  
     0.723
CSIRO_1191
Crotonobetaine carnitine-CoA ligase.
       0.716
CSIRO_1367
TesB-like acyl-CoA thioesterase.
  
     0.663
CSIRO_3886
Flavin-binding family monooxygenase.
  
     0.635
CSIRO_1194
Hypothetical protein; Belongs to the cytochrome P450 family.
 
     0.552
CSIRO_1552
Hypothetical protein.
 
     0.509
CSIRO_2690
Hypothetical protein.
  
     0.497
CSIRO_3884
Alpha/beta hydrolase fold-3 domain-containing protein.
  
  
  0.496
CSIRO_2064
Lipase/esterase.
  
  
  0.479
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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