Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1216Hypothetical protein. (252 aa)    
Predicted Functional Partners:
CSIRO_1217
Hypothetical protein.
 
 
 0.992
CSIRO_3640
Nitrate ABC transporter permease.
 
 0.982
CSIRO_1241
Benzoate transport protein, ATPase component.
 
  
 
0.921
CSIRO_3924
Putative amino-acid ATP-binding ABC transporter protein.
 
  
 
0.855
CSIRO_4010
ABC transporter permease protein.
     
 0.849
CSIRO_4048
ABC-type multidrug transport system, permease component.
  
 
 0.824
oppD
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
   
 
0.800
lolD
Lipoprotein releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
0.773
CSIRO_2196
AttE component of AttEFGH ABC transport system.
 
  
0.757
rfbD
O-antigen export system permease protein RfbD.
    
 0.757
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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