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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1217Hypothetical protein. (275 aa)    
Predicted Functional Partners:
CSIRO_1216
Hypothetical protein.
 
 
 0.981
CSIRO_3641
ABC transporter ATP-binding protein.
  
 
 0.640
CSIRO_4047
ABC-type multidrug transport system, ATPase component.
  
 
 0.640
prrB
Sensor histidine kinase PrrB.
       0.582
ugpE
SN-glycerol-3-phosphate transport system permease protein UgpE; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
     
 0.552
ctaA
Heme A synthase, cytochrome oxidase biogenesis protein; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.
    
 0.481
CSIRO_1218
Polyhydroxyalkanoate depolymerase.
       0.476
CSIRO_1411
Nitroreductase-like protein.
  
  
 0.465
CSIRO_1911
Nitroreductase.
  
  
 0.465
CSIRO_3582
Nitroreductase.
  
  
 0.465
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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