STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1218Polyhydroxyalkanoate depolymerase. (418 aa)    
Predicted Functional Partners:
CSIRO_3138
Polyhydroxyalkanoic acid synthase.
 
  
 0.810
CSIRO_2237
Polyhydroxyalkanoic acid synthase.
 
  
 0.628
phbF
PhbF.
 
   
 0.603
CSIRO_1216
Hypothetical protein.
       0.476
CSIRO_1217
Hypothetical protein.
       0.476
CSIRO_3382
Hypothetical protein.
  
   
 0.462
CSIRO_1219
Zinc metalloprotease.
       0.449
CSIRO_0697
Ferredoxin reductase.
  
     0.420
clpX
ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
    0.402
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.