Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1224Hypothetical protein. (185 aa)    
Predicted Functional Partners:
CSIRO_1225
Putative cytochrome C-type biogenesis protein.
  
 0.986
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
   
   0.709
CSIRO_1448
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.689
CSIRO_1314
Cytochrome c-type biogenesis protein CcdA.
  
 0.617
CSIRO_1226
Putative energy transducer TonB.
       0.508
trpC
Indole-3-glycerol phosphate synthase; Belongs to the TrpC family.
  
 
  0.479
tlpA
Thiol:disulfide oxidoreductase TlpA.
 
   
 0.475
CSIRO_1227
Biopolymer transport protein ExbD/TolR.
       0.457
CSIRO_1228
MotA/TolQ/ExbB proton channel family protein.
       0.457
CSIRO_1229
Hypothetical protein.
       0.431
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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