Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1231Hypothetical protein. (388 aa)    
Predicted Functional Partners:
CSIRO_1232
TonB-dependent siderophore receptor.
 
  
 0.769
CSIRO_1230
TonB-dependent receptor.
 
   
 0.696
CSIRO_1249
Benzoyl-CoA oxygenase.
     
  0.685
CSIRO_1706
Putative outer membrane protein.
 
   
 0.490
piuC
Iron-uptake factor PiuC.
 
     0.479
CSIRO_1451
Hypothetical protein.
  
  
 0.476
CSIRO_1511
Sulfate adenylyltransferase subunit 2.
     
 0.415
CSIRO_1516
Phosphoadenylyl-sulfate reductase/ adenylyl-sulfate reductase; Reduction of activated sulfate into sulfite.
     
 0.415
CSIRO_2854
Copper metallochaperone.
  
    0.415
CSIRO_0615
Nickel/cobalt-specific TonB-dependent outer membrane receptor.
 
   
 0.405
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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