Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSIRO_1237long-chain-fatty-acid--CoA ligase. (619 aa)    
Predicted Functional Partners:
CSIRO_1238
Benzoate transport protein, extracellular ligand-binding receptor.
 
     0.766
CSIRO_1247
benzoyl-CoA-dihydrodiol lyase.
  
  0.734
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.723
CSIRO_2479
Acyl carrier protein.
  
 0.721
rplF
LSU ribosomal protein L6p; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.698
CSIRO_1428
Transcriptional regulator, MarR family.
  
     0.670
CSIRO_1248
Benzoyl-CoA oxygenase.
  
  
  0.666
CSIRO_1422
P-hydroxybenzoate hydroxylase.
  
  
 0.655
CSIRO_3016
Phosphatidylglycerophosphatase B.
    
  0.636
CSIRO_1246
Benzoate degradation ring-cleavage hydrolase.
  
 
  0.608
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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