STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1246Benzoate degradation ring-cleavage hydrolase. (272 aa)    
Predicted Functional Partners:
CSIRO_1247
benzoyl-CoA-dihydrodiol lyase.
 
 
   0.900
CSIRO_1245
benzoate-CoA ligase.
 
  
  0.867
CSIRO_1248
Benzoyl-CoA oxygenase.
 
     0.863
CSIRO_1249
Benzoyl-CoA oxygenase.
 
  
  0.850
aroK-2
Benzoate catabolism regulator; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
    0.811
CSIRO_1729
Anthranilate synthase.
    
 0.680
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
  0.655
CSIRO_2005
ABC transporter ATP-binding/permease protein; Belongs to the binding-protein-dependent transport system permease family.
    
  0.643
CSIRO_2812
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.627
CSIRO_1237
long-chain-fatty-acid--CoA ligase.
  
 
  0.613
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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