Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSIRO_1246Benzoate degradation ring-cleavage hydrolase. (272 aa)    
Predicted Functional Partners:
CSIRO_1247
benzoyl-CoA-dihydrodiol lyase.
 
 
  0.947
CSIRO_1245
benzoate-CoA ligase.
 
  
  0.887
CSIRO_1248
Benzoyl-CoA oxygenase.
 
     0.876
CSIRO_1249
Benzoyl-CoA oxygenase.
 
  
  0.846
aroK-2
Benzoate catabolism regulator; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
    0.816
CSIRO_2812
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.766
CSIRO_0814
2-oxoglutarate dehydrogenase E1 component.
    
  0.644
CSIRO_2123
Sulfide dehydrogenase flavoprotein chain precursor.
    
 0.633
CSIRO_1237
long-chain-fatty-acid--CoA ligase.
  
 
  0.608
CSIRO_0813
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
    
  0.597
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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