Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1265Lipolytic enzyme. (285 aa)    
Predicted Functional Partners:
opgC
OpgC protein.
 
     0.896
CSIRO_1264
Lipolytic enzyme.
 
    
0.807
CSIRO_0821
Arylesterase precursor.
     
  0.757
CSIRO_2382
Hypothetical protein.
 
 
 0.694
CSIRO_3040
Hypothetical protein.
 
     0.627
CSIRO_3943
Tricarboxylate transport protein.
  
     0.584
CSIRO_2434
Hypothetical protein.
  
 0.555
CSIRO_2374
Hypothetical protein.
   
 0.552
CSIRO_2377
Hypothetical protein.
   
 0.552
CSIRO_0545
Putative acyl-CoA thioesterase precursor.
  
  
  0.546
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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