Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1271Two-component response regulator. (406 aa)    
Predicted Functional Partners:
CSIRO_2689
Diguanylate phosphodiesterase.
 
 0.888
CSIRO_2316
Hypothetical protein.
  
 
 0.880
CSIRO_0951
Hypothetical protein.
 
 
 0.867
CSIRO_4084
Hypothetical protein.
 
 0.866
CSIRO_0299
Diguanylate cyclase/phosphodiesterase.
 
 0.853
CSIRO_3217
Hypothetical protein.
 
 
 0.851
CSIRO_0363
Diguanylate cyclase.
 
 
 0.850
CSIRO_3776
Sensory box/GGDEF domain-containing protein.
 
 
 0.847
CSIRO_1188
Hypothetical protein.
 
 
 0.846
CSIRO_3150
Hypothetical protein.
 
 
 0.843
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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