Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1274Transcriptional regulator, AraC family. (282 aa)    
Predicted Functional Partners:
CSIRO_1275
methylated-DNA--protein-cysteine methyltransferase.
     
 0.839
CSIRO_1273
Hypothetical protein.
 
     0.817
CSIRO_1272
Hypothetical protein.
 
     0.801
CSIRO_0268
Glutamate synthase (NADPH) large chain.
    
 0.711
CSIRO_2662
NAD-dependent malic enzyme.
     
 0.657
CSIRO_1808
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
    
  0.648
CSIRO_3985
AraC family transcriptional regulator.
  
     0.595
CSIRO_0737
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.552
CSIRO_0717
Hypothetical protein.
  
     0.474
CSIRO_0223
Transcriptional regulator, MerR family.
  
   
 0.472
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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