STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1284ABC transporter. (289 aa)    
Predicted Functional Partners:
CSIRO_3010
Amino acid ABC transporter, permease protein.
 
 0.893
CSIRO_3009
ABC transporter related protein.
 
 0.861
CSIRO_2365
Sensory box histidine kinase/response regulator.
   
 0.837
CSIRO_1285
Integral membrane protein.
  
 
  0.816
CSIRO_1341
Sensor histidine kinase.
  
 0.794
CSIRO_3011
ABC-type amino acid transport system periplasmic component.
 
 
 0.772
CSIRO_4108
Hypothetical protein.
    
 0.764
CSIRO_3420
Quino(hemo)protein alcohol dehydrogenase.
  
 
 0.760
CSIRO_4010
ABC transporter permease protein.
     
 0.755
cheA
Signal transduction histidine kinase CheA.
   
 0.737
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.