Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1285Integral membrane protein. (216 aa)    
Predicted Functional Partners:
CSIRO_1284
ABC transporter.
    
 0.845
lysS
lysyl-tRNA synthetase (class I); Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.769
CSIRO_1287
YbaK family protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.716
CSIRO_2479
Acyl carrier protein.
    
 0.670
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 0.670
CSIRO_1249
Benzoyl-CoA oxygenase.
     
  0.664
CSIRO_2529
Methyltransferase.
  
  
 0.621
pcaT
Dicarboxylic acid transporter PcaT.
     
  0.598
CSIRO_3341
Major facilitator superfamily permease.
     
  0.598
CSIRO_4289
Multidrug resistance transporter, Bcr/CflA family.
     
  0.598
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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