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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysSlysyl-tRNA synthetase (class I); Belongs to the class-I aminoacyl-tRNA synthetase family. (546 aa)    
Predicted Functional Partners:
CSIRO_1381
Hypothetical protein.
  
    0.762
CSIRO_1287
YbaK family protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.748
CSIRO_1285
Integral membrane protein.
       0.713
CSIRO_1284
ABC transporter.
       0.688
CSIRO_4034
Hypothetical protein.
  
     0.672
nadK
NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
  
     0.539
CSIRO_0997
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.534
CSIRO_0639
ATP-dependent DNA helicase.
  
     0.525
CSIRO_1283
Putative glycosyl transferase.
       0.512
CSIRO_0384
Hypothetical protein; Belongs to the UPF0335 family.
  
     0.500
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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