STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1323Hypothetical protein. (130 aa)    
Predicted Functional Partners:
CSIRO_1324
Cytochrome oxidase biogenesis protein.
 
     0.869
CSIRO_0880
Hypothetical protein.
  
     0.734
ctaG
Cytochrome oxidase biogenesis protein; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
 
     0.709
CSIRO_1322
Cytochrome c oxidase polypeptide III.
 
     0.684
CSIRO_2736
Protein of unknown function DUF1467.
  
     0.611
CSIRO_1210
Hypothetical protein.
  
     0.590
CSIRO_1669
Hypothetical protein.
  
     0.570
coxF
CoxF protein.
 
     0.569
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
     0.560
CSIRO_1325
Threonine synthase.
       0.553
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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