Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1349Hypothetical protein. (196 aa)    
Predicted Functional Partners:
CSIRO_1194
Hypothetical protein; Belongs to the cytochrome P450 family.
  
 
  0.564
CSIRO_1350
Hypothetical protein.
       0.554
CSIRO_4275
Putative cytochrome P450 hydroxylase.
  
 
  0.503
CSIRO_2542
Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.439
CSIRO_1911
Nitroreductase.
  
     0.431
CSIRO_0268
Glutamate synthase (NADPH) large chain.
    
  0.426
CSIRO_4280
Putative dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.418
CSIRO_3614
Phenylacetic acid degradation-related protein.
  
     0.414
CSIRO_1347
Hypothetical protein.
       0.410
leuD
3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
     
  0.409
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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