Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1373TRAP transporter. (704 aa)    
Predicted Functional Partners:
CSIRO_1372
TRAP transporter solute receptor.
 
 
  0.948
CSIRO_1195
TRAP transporter solute receptor, TAXI family precursor.
 
 
  0.901
CSIRO_2190
TRAP transporter solute receptor, TAXI family precursor.
 
 
  0.901
CSIRO_1374
DUF1850 domain-containing protein.
 
 
  0.878
CSIRO_2293
TRAP transporter solute receptor, TAXI family precursor.
 
 
  0.700
CSIRO_1028
Putative exported protein.
 
 
  0.651
CSIRO_1637
TRAP dicarboxylate transporter DctM subunit.
  
  
  0.628
CSIRO_4004
TRAP-like C4-dicarboxylate transport system, periplasmic component.
  
  
 0.601
CSIRO_4003
TRAP-like transport system, small permease component.
  
  
 0.565
CSIRO_4002
TRAP-like C4-dicarboxylate transport system, large permease component.
  
  
 
0.521
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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