STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1374DUF1850 domain-containing protein. (377 aa)    
Predicted Functional Partners:
CSIRO_1373
TRAP transporter.
 
 
  0.887
CSIRO_1372
TRAP transporter solute receptor.
 
 
  0.765
CSIRO_1196
TRAP-type transport system protein.
 
 
  0.555
CSIRO_2191
TRAP-like transport system fused permease component.
 
 
  0.554
CSIRO_1195
TRAP transporter solute receptor, TAXI family precursor.
 
 
  0.519
CSIRO_2190
TRAP transporter solute receptor, TAXI family precursor.
 
 
  0.514
CSIRO_3406
TPR repeat-containing protein.
  
     0.513
CSIRO_1376
Hypothetical protein.
       0.509
CSIRO_1375
Acetyl-coenzyme A synthetase.
       0.497
CSIRO_2292
TRAP transporter.
  
 
  0.495
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.