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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1405alpha-methylacyl-CoA racemase; Belongs to the CoA-transferase III family. (374 aa)    
Predicted Functional Partners:
CSIRO_1406
3-hydroxyacyl-CoA dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
  0.744
CSIRO_2327
methylmalonyl-CoA mutase.
    
 0.709
CSIRO_2329
methylmalonyl-CoA mutase.
    
 0.709
CSIRO_1407
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
    
  0.689
CSIRO_1408
feruloyl-CoA synthetase.
    
  0.603
CSIRO_1411
Nitroreductase-like protein.
 
 
  0.599
CSIRO_1410
Putative acyl-CoA dehydrogenase.
 
 
  0.558
CSIRO_1404
Rranscriptional regulator, TetR family.
       0.554
CSIRO_1402
long-chain-fatty-acid--CoA ligase.
 
  
  0.496
CSIRO_1403
3-ketoacyl-CoA thiolase@ Acetyl-CoA acetyltransferase; Bifunctional; Belongs to the thiolase-like superfamily. Thiolase family.
    
  0.495
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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