Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1421Phenylacetic acid degradation-related protein. (143 aa)    
Predicted Functional Partners:
CSIRO_3963
Hypothetical protein.
  
     0.756
CSIRO_2660
Hypothetical protein.
  
     0.731
CSIRO_3690
Hypothetical protein.
  
     0.666
CSIRO_2688
Hypothetical protein.
  
     0.642
CSIRO_3295
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
 0.584
CSIRO_1340
Dpoxide hydrolase.
 
     0.539
CSIRO_3245
Glutathione-dependent 2-hydroxychromene-2-carboxylate isomerase family protein.
 
     0.537
CSIRO_1552
Hypothetical protein.
  
 
   0.480
CSIRO_1651
Hypothetical protein.
  
     0.472
CSIRO_3961
Short-chain specific acyl-CoA dehydrogenase.
  
 
  0.470
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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