Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1457Oligopeptide/dipeptide uptake family ABC transporter. (392 aa)    
Predicted Functional Partners:
CSIRO_1456
Oligopeptide transport system permease protein.
 
 
 0.991
CSIRO_1458
Oligopeptide transport system permease protein; Belongs to the ABC transporter superfamily.
 
 
 0.988
CSIRO_2900
ABC transporter, periplasmic substrate-binding protein.
 
 
 0.943
CSIRO_2070
Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.
 
  
 0.886
CSIRO_2422
Putative glutathione transporter, permease component.
  
 0.866
dppB
Dipeptide transport system permease protein DppB.
 
  
 0.860
oppD
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
  
 0.858
oppF
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
  
 0.801
CSIRO_2421
Dipeptide-binding ABC transporter, periplasmic substrate-binding component.
 
  
 0.740
CSIRO_4010
ABC transporter permease protein.
     
  0.658
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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