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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1459NLP/P60 family lipoprotein. (292 aa)    
Predicted Functional Partners:
CSIRO_1460
Peptidase B; Belongs to the peptidase M17 family.
       0.800
CSIRO_4082
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.717
CSIRO_3171
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.703
ftsI
Cell division protein FtsI.
    
 0.640
tadD
Flp pilus assembly protein TadD.
   
   0.592
murC
UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
  
 
  0.588
CSIRO_1573
Methyl-accepting chemotaxis protein.
 
    0.560
CSIRO_2833
Beta N-acetyl-glucosaminidase.
 
  
 0.553
CSIRO_0826
Hypothetical protein.
  
     0.526
CSIRO_0987
Hypothetical protein.
  
     0.505
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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