Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSIRO_1459NLP/P60 family lipoprotein. (292 aa)    
Predicted Functional Partners:
CSIRO_1460
Peptidase B; Belongs to the peptidase M17 family.
       0.837
ftsX
Cell division protein FtsX.
   
 
 0.751
CSIRO_0798
Carboxyl-terminal protease; Belongs to the peptidase S41A family.
    
 
 0.745
CSIRO_4082
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.712
CSIRO_3171
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.681
ftsI
Cell division protein FtsI.
    
 0.624
tadD
Flp pilus assembly protein TadD.
   
   0.621
CSIRO_3170
Multimodular transpeptidase-transglycosylase; Bifunctional.
     
 0.581
CSIRO_1573
Methyl-accepting chemotaxis protein.
 
  
 0.568
ftsE
ATP-binding protein FtsE.
  
 
 0.534
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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