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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1460Peptidase B; Belongs to the peptidase M17 family. (460 aa)    
Predicted Functional Partners:
CSIRO_1459
NLP/P60 family lipoprotein.
       0.800
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
 
  
  0.794
CSIRO_3736
Lignostilbene-alpha,beta-dioxygenase.
     
 0.735
pepA
Cytosol aminopeptidase PepA; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
  
  
 
0.697
gshB
Glutathione synthetase; Belongs to the prokaryotic GSH synthase family.
   
 
 0.685
CSIRO_0404
Gamma-glutamyltranspeptidase.
  
  
 0.681
CSIRO_1310
Glutamate--cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.
  
  
  0.664
CSIRO_2876
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.659
CSIRO_3008
Cysteine synthase B.
    
 0.659
CSIRO_0178
Aspartate aminotransferase.
   
  0.654
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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